Genescript Annotation Pipeline

Information Documentation Download Example Output

Requirements

Required Optional
Main Advanced dbEST Search
Perl 5.6 Nclever
NCBI Blast/Formatdb TIGR Assembler 2
Sim4Other
Gff2ps Ghostscript
RepeatMasker (contact author) MaskerAid (contact author)
Perl Modules Gene Prediction
BioPerl 1.0 (cpan) Genscan
GFF (download) HMMgene (contact author)
Getopt::Long (cpan) Grail EXP
IPC::Open2 (cpan) MZEF
Math::Round (cpan)

Distribution

Package Version MD5
genescript.tar.gz 5.1.3 d8683301fffcc97e400e832e5ca6cf4d
genescript.zip 5.1.3 f904afcfe92b970dee2ca3f44c3207e2

Binary Source

These are only needed if you plan on using a system other than SGI or Linux.

PackageMD5
align2png.tar.gz f0f43eb63a1688c41df718fb0d999aac
align2png.zip d26571d7baff5b2acec3adc0f33a9ec7
clusterGif.tar.gz 73ee0e3a1ba43bb360b370a1923d1586
clusterGif.zip d671cbbe984efcea08d02f9d3cc46c7a